PPI-HotSpotDB

You can download the entire PPI-HotSpotDB database as an Excel spreadsheet, the file consists of four separate tables or tabs, PDB_SEPARATE, PDB_AGGREGATED, UNIPROT and BOUND.

PPI-HotSpot+PDBBM

The PPI-Hotspot+PDBBM, a benchmark set of 158 (updated Sep 2023) cleaned nonredundent free PDB chains which can be downloaded below, these chains are the benchmark ones we use for testing hotspot prediction methods we have in development such as CritiRes. The table below gives subset of the information on each chain in the benchmark, if you would like to use this data then we suggest obtaining it via the links above. Resolution is in Angs where "-1" indicates an NMR structure.
Uniprot IDUniprot Res IDPDB IDChainResolution PDB Res IDResidue typeMutationsConservationPubmedDDG Hotspot
P218363281c2bA4.5297FI181576521.98P
P218361551c2bA4.5124YQ281576522.88P
P218361031c2bA4.572YN181576525.01P
P218363171c2bA4.5286WR181576528.45P
P218363681c2bA4.5337YA281576520.37N
Q6276813644y21A2.9432IF816271475n/aP
P547253331oqyA-1.0333PE911087358n/aP
O75530973jznA2.697FA820974918n/aP
O755301483jznA2.6148YA820974918n/aP
O755303643jznA2.6364WA920974918n/aP
O755303643jznA2.6364WL920974918n/aP
O755303653jznA2.6365YA820974918n/aP
Q157502132j4oA2.25213DA717560374n/aP
Q157502162j4oA2.25216FA317560374n/aP
P63096425js7A-1.042GR822383884n/aP
P461081502eyzA-1.0150DK98662907n/aP
P461081692eyzA-1.0169WK931311869n/aP
P461081692eyzA-1.0169WL912432078n/aP
P461082752eyzA-1.0275WK831311869n/aN
P61964472h14A1.4847AE116600877n/aP
P61964912h14A1.4891SF116600877n/aP
P619641072h14A1.48107DA116600877n/aP
P619641332h14A1.48133FD116600877n/aP
P619643222h14A1.48322EA316600877n/aP
P619641072h14A1.48107DN1168299602.22P
P619641332h14A1.48133FA1168299602.22P
P619641332h14A1.48133FL1168299602.22P
P619642632h14A1.48263FA6168299602.22P
P619642632h14A1.48263FW6168299602.22P
P619643212h14A1.48321LA716829960nbP
P619642252h14A1.48225NA721220120nbP
P619642402h14A1.48240LK721220120nbP
P619642602h14A1.48260YF216829960-0.57N
Q152573052ixmA1.5270EA916916641n/aP
Q152573252ixmA1.5290GD916916641n/aP
Q152573292ixmA1.5294MD916916641n/aP
Q152571852ixmA1.5150DA916916641n/aN
Q152571902ixmA1.5155HA916916641n/aN
Q152572282ixmA1.5193RA916916641n/aN
Q152572392ixmA1.5204AD916916641n/aN
Q152572402ixmA1.5205GD916916641n/aN
Q152572432ixmA1.5208GD916916641n/aN
Q152572442ixmA1.5209VD916916641n/aN
Q152572492ixmA1.5214DA916916641n/aN
Q152573162ixmA1.5281VD916916641n/aN
Q152573372ixmA1.5302KG916916641n/aN
Q152571832ixmA1.5148RL916916641n/aN
Q152572212ixmA1.5186NA116916641n/aN
Q152573432ixmA1.5308HA916916641n/aN
Q152571602ixmA1.5125PA416916641n/aN
Q152573392ixmA1.5304PG916916641n/aN
Q141453344ifjA1.8334YA816888629n/aP
Q141453824ifjA1.8382NA616888629n/aP
Q141454364ifjA1.8436HA216888629n/aP
Q141455254ifjA1.8525YA416888629n/aP
Q141455724ifjA1.8572YA416888629n/aP
Q141453804ifjA1.8380RA616888629n/aP
Q141454154ifjA1.8415RA516888629n/aP
Q141454834ifjA1.8483RA616888629n/aP
Q141453354ifjA1.8335FA116888629n/aN
Q141453374ifjA1.8337QA216888629n/aN
Q141453874ifjA1.8387NA816888629n/aN
Q141454344ifjA1.8434CA316888629n/aN
Q141454784ifjA1.8478FA216888629n/aN
Q141455304ifjA1.8530QA616888629n/aN
Q141455774ifjA1.8577FA616888629n/aN
Q141453364ifjA1.8336RA516888629n/aN
Q141454594ifjA1.8459RA416888629n/aN
Q141455514ifjA1.8551KA116888629n/aN
Q141455534ifjA1.8553RA416888629n/aN
Q141453844ifjA1.8384PA116888629n/aN
P625931021zg4A1.55104EA2249472752.83P
P625931031zg4A1.55105YA6249472752.29P
P625931091zg4A1.55111KA1249472752.18P
P625931271zg4A1.55129MA2249472752.56P
P625931021zg4A1.55104EA2170708432.34P
P625931021zg4A1.55104EK298910084.23P
P625931021zg4A1.55104ED2212941573.6P
P625931021zg4A1.55104EK2212941572.2P
P625932141zg4A1.55216VA924947275-0.59N
P625932141zg4A1.55216VA9249472750.04N
P625931661zg4A1.55168EA217070843-0.02N
P625932141zg4A1.55216VA917070843-0.93N
P625932361zg4A1.55238GS89891008-0.27N
P62593981zg4A1.55100NA124947275-1.5N
P625931051zg4A1.55107PA9249472750.24N
P62593971zg4A1.5599QA1170708430.43N
P62593981zg4A1.55100NA117070843-0.14N
P625931051zg4A1.55107PA9170708430.17N
P625931281zg4A1.55130SA9156184000.33N
P625932381zg4A1.55241RY227956635-0.14N
P625931691zg4A1.55171EK727956635-0.6N
P625932371zg4A1.55240EK227956635-0.41N
P625932681zg4A1.55272MA324947275-0.05N
P625932681zg4A1.55272MA324947275-0.05N
P625932681zg4A1.55272MA3249472750.28N
P17844534a4dA2.753KR217369852n/aP
P174278401qtsA1.4840WA910380931n/aP
P174279071qtsA1.4907EA910380931n/aP
P174279201qtsA1.4920RA910380931n/aP
P174278401qtsA1.4840WA910380931n/aP
P174278401qtsA1.4840WA910380931n/aP
P174278401qtsA1.4840WA910380931n/aP
P174278371qtsA1.4837FA910380931n/aP
P174278401qtsA1.4840WA910380931n/aP
P174279071qtsA1.4907EA910380931n/aP
P174279201qtsA1.4920RA910380931n/aP
P174277071qtsA1.4707RS510380931n/aN
P174278491qtsA1.4849EA910380931n/aN
P174277071qtsA1.4707RS510380931n/aN
P174278491qtsA1.4849EA910380931n/aN
P174277071qtsA1.4707RS510380931n/aN
P174278491qtsA1.4849EA910380931n/aN
P174277071qtsA1.4707RS510380931n/aN
P174278491qtsA1.4849EA910380931n/aN
P174277071qtsA1.4707RS510380931n/aN
P174278491qtsA1.4849EA910380931n/aN
P124931896wapA-1.057NS929997211n/aP
P124933056wapA-1.0173RA929997211n/aP
P124931896wapA-1.057NA924130490n/aP
P124931896wapA-1.057ND924130490n/aP
P124931776wapA-1.045EA424130490n/aN
P124931866wapA-1.054TA124130490n/aN
P124932026wapA-1.070KA824130490n/aN
P124932026wapA-1.070KR824130490n/aN
P124932066wapA-1.074NA924130490n/aN
P124932066wapA-1.074ND924130490n/aN
P124932216wapA-1.089GV924130490n/aN
P124931706wapA-1.038PA924130490n/aN
O758321821tr4A-1.0182EA410613832n/aP
O758321781tr4A-1.0178LA110613832n/aN
O888381202afjA-1.0120YA916369487n/aP
O888382062afjA-1.0206VA916369487n/aP
O888381202afjA-1.0120YA920603330n/aP
O888381202afjA-1.0120YF920603330n/aP
O888382062afjA-1.0206VA920603330n/aP
O888382072afjA-1.0207WA820603330n/aP
O888382102afjA-1.0210CA816369487n/aN
O151185035f18A2131FG426771495nbP
O151185035f18A2131FA426771495nbP
O151185045f18A2132FG126771495nbP
O151185045f18A2132FA126771495nbP
O151185065f18A2134YA126771495nbP
O151184235f18A251YA5267714950.03N
O151184245f18A252PG1267714950.18N
O151184245f18A252PA1267714950.34N
P06730732gpqA-1.073WA922578813n/aP
O147453552krgA-1.0355FR915020681n/aP
P02829971ah6A1.897AI99632755n/aP
P028291701ah6A1.8170GD99632755n/aP
P028291011ah6A1.8101TI99632755n/aN
P48551731n6uA-1.046MA6105560413.68P
P485511271n6uA-1.0100WA1105560412.73P
P48551731n6uA-1.046MA6218549862.32P
P485511041n6uA-1.077EA5218549862.41P
P485511071n6uA-1.080VA2218549862.32P
P48551711n6uA-1.044TA6116986842.01P
P48551741n6uA-1.047SA9105560410.47N
P48551751n6uA-1.048KA4105560410.31N
P48551771n6uA-1.050EA5105560410.2N
P48551801n6uA-1.053KA3105560410.38N
P485511011n6uA-1.074SA2105560410.31N
P485511251n6uA-1.098NA110556041-0.21N
P485511651n6uA-1.0138DR210556041-0.06N
P485512161n6uA-1.0189DR1105560410.49N
P485512161n6uA-1.0189DA110556041-0.13N
P485512171n6uA-1.0190EA5105560410.16N
P48551331n6uA-1.06DR4218549860.1N
P48551361n6uA-1.09DR1218549860.03N
P48551771n6uA-1.050EA5218549860.21N
P48551781n6uA-1.051DA1218549860N
P485511001n6uA-1.073RA1218549860.17N
P485511011n6uA-1.074SA2218549860.27N
P485511021n6uA-1.075TA1218549860.26N
P485511241n6uA-1.097HA1218549860.04N
P485511251n6uA-1.098NA121854986-0.13N
P485511591n6uA-1.0132ER1218549860N
P485511651n6uA-1.0138DR221854986-0.1N
P485512141n6uA-1.0187HA6218549860N
P485512161n6uA-1.0189DA121854986-0.1N
P485512171n6uA-1.0190EA5218549860.24N
P48551551n6uA-1.028ER7218549860N
P485511051n6uA-1.078AM321854986-0.17N
P485511031n6uA-1.076HA121854986-0.6N
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P13726521boyA2.220KA97654692>2P
P13726521boyA2.220KA979478092.5P
P13726761boyA2.244DA579478092.2P
P13726771boyA2.245WA479478092.5P
P137261721boyA2.2140FA679478092.3P
P13726831boyA2.251YA17756258-0.1N
P137261261boyA2.294YA477562580.3N
P13726681boyA2.236VA97756258-0.1N
P13726701boyA2.238IA67756258-0.1N
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P137261991boyA2.2167TA276546920.212N
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P137261951boyA2.2163SA876546920.023N
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Q9ULZ3672kn6A-1.067EA315641782n/aP
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P01050191hicA-1.019SD681357620.27N
P01050491hicA-1.049QE481357620.03N

The PPI-HotSpotDB database and server was created by Chen Yao-Chi, Chen Yu-Hsien, Jon D Wright and Carmay Lim and is hosted at The Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan.